Database Record
ANISEED: Ascidian Network of In Situ Expression and Embryological Data
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC01432 | ||||
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| Database nameName of the database | ANISEED | ||||
| Alternative nameAlternative name of the database | Ascidian Network of In Situ Expression and Embryological Data | ||||
| URLURL of the database | http://www.aniseed.cnrs.fr/aniseed/ | ||||
| Database maintenance siteSite maintaining the database | Institut de Biologie du Développement de Marseille | ||||
| Country/RegionCountry or region name where the database maintenance site is located | France | ||||
| Database descriptionDatabase descirption | ANISEED is a database about gene expression in Ascidian embryos. It contains detailed anatomical ontologies for Ascidian embryos, and quantitative geometrical descriptions of developing cells obtained from reconstructed three-dimensional (3D) embryos up to the gastrula stages. In this database, fully annotated gene model sets are linked to high-resolution spatial gene expression patterns in wild-type and experimentally manipulated conditions and to experimentally validated cis-regulatory regions imported from specialized databases or extracted from literature articles. This database allows searches using following categories: 1) Genome Annotations (genes, cDNA clones, cis-regulatory regions) 2) Anatomy (anatomical ontology, embryo scheme) 3) gene Expression & Function (expression data, phenotypes) 4) Literature. It also allows exploration by BLAST or genome browser. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Botryllus schlosseri (30301), Ciona intestinalis (7719), Ciona savignyi (51511), Halocynthia aurantium (254849), Halocynthia roretzi (7729), Phallusia fumigata (395376), Phallusia mammillata (59560) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Active | ||||
| Link(s) to Downloadable dataLinks to downloadable data | http://www.aniseed.cnrs.fr/aniseed/download/download_data | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | http://www.aniseed.cnrs.fr/aniseed/download/download_data | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | https://fairsharing.org/biodbcore-000752 | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2015-03-10 | ||||
| Last update date of this recordLast update date of this English record | 2015-03-10 | ||||
| Record license | Creative Commons CC0 license |