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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
ICBMS (Institute for Molecular and Supramolecular Chemistry and Biochemistry, University of Lyon 1)
Organism(s) covered:
Description:
MatrixDB is a database focused on interactions established by extracellular proteins and polysacchar...
Database maintenance site:
QFAB (Queensland Facility for Advanced Bioinformatics)
Organism(s) covered:
Araneae
Description:
ArachnoServer is a manually curated database which contains information on the sequence, three-dimen...
Database maintenance site:
Centre for DNA Fingerprinting and Diagnostics
Organism(s) covered:
Bacteria | Archaea
Description:
PSSRdb is a relational database of polymorphic simple sequence repeats (PSSRs) extracted from 85 dif...
Database maintenance site:
Bioinformatics Lab., Institute of Information Science, Academia Sinica
Organism(s) covered:
Description:
The TMPad database contains information on the structural folds in alpha-helical membrane proteins o...
Database maintenance site:
Zhejiang University
Organism(s) covered:
Arabidopsis thaliana | Oryza sativa
Description:
PmiRKB (Plant microRNA Knowledge Base) is a database collecting information on miRNAs from Arabidops...
Database maintenance site:
Institute of Bioinformatics and Systems Biology, National Chiao Tung University
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Gallus gallus | Bos taurus | ...
Description:
miRTarBase Version 3.5 is a database that contains information about miRNA-target interactions (MTIs...
Database maintenance site:
Institute for Molecular Bioscience, The University of Queensland
Organism(s) covered:
Eukaryota
Description:
lncRNAdb is a database providing comprehensive annotations of long non-coding RNAs (lncRNAs) in euka...
Database maintenance site:
Institute of Cytology and Preventive Oncology
Organism(s) covered:
Homo sapiens
Description:
CCGD is a manually curated collection of experimenatlly validated genes which are thought to be invo...
Database maintenance site:
Boston University
Organism(s) covered:
Archaea | Bacteria
Description:
COMBREX is a database of experimentally determined and computationally predicted functions for bacte...
Database maintenance site:
RIKEN Quantitative Biology Center
Organism(s) covered:
Caenorhabditis elegans
Description:
WDDD is a database of C. elegans development. The database contains images and quantitative cell div...
Database maintenance site:
Institute of Physics, Polish Academy of Sciences
Organism(s) covered:
Description:
BSDB is a database that houses information about the mechanical stretching of proteins.
Both ends of...
Database maintenance site:
Flanders Institute of Biotechnology, Free University of Brussels
Organism(s) covered:
Description:
Database maintenance site:
Shanghai Jiao Tong University
Organism(s) covered:
Description:
The AlloSteric Database (ASD) provides a central resource for the display, search and analysis of st...
Database maintenance site:
Institute of Theoretical Chemistry, University of Vienna
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
AREsite is a database of the investigation of AU-rich elements (ARE) in vertebrate mRNA UTR sequence...
Database maintenance site:
EuPathDB Bioinformatics Resource Center
Organism(s) covered:
Entamoeba dispar SAW760 | Entamoeba histolytica HM-1:IMSS | Entamoeba histolytica DS4-868 | Entamoeba histolytica KU27 | Entamoeba histolytica KU48 | ...
Description:
This is an database of genomes and results of functional genomic analysis of parasitic amoeba such a...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
CellMontage is a system to search and analyze microarray data. The system enables users to compare g...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Homo sapiens
Description:
The Mutation Database is a repository for information about genes that are causative for or implicat...
Database maintenance site:
JBIC (Japan Biological Informatics Consortium)
Organism(s) covered:
Description:
PaGE-OM (Phenotype and Genotype-Object Model) is a data model with which PaGE-OM can be applied to o...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
Database maintenance site:
JT Biohistory Research Hall
Organism(s) covered:
Description:
Quarterly journal "Biohistory" is a repository of a quarterly magazine; "Biohistory" published by JT...
Database maintenance site:
National Institute of Advanced Industrial Science and Technology, Biomedicinal Information Research Center
Organism(s) covered:
Homo sapiens
Description:
PCDq is a human protein complex database with quality index. The protein complex quality index (CQI)...
Database maintenance site:
National Institute of Advanced Industrial Science and Technology, Biomedicinal Information Research Center
Organism(s) covered:
Homo sapiens
Description:
RAvariome is a human genetic variant database for the autoimmune inflammatory disease, Rheumatoid Ar...
Database maintenance site:
Okayama University Institute of Plant Science and Resources
Organism(s) covered:
Embryophyta
Description:
Naturalized Plants in Japan ~Seed-Image database~ is an image database of naturalized alien plant se...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Drosophila melanogaster | Mus musculus | Homo sapiens | Saccharomyces cerevisiae | Dictyostelids | ...
Description:
The Autophagy Database aims to provide researchers with new information about autophagy-related prot...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
SAHG is a database of protein structure predictions. The database contains predictions for proteins ...
Database maintenance site:
DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description:
Allie Portal is a portal site of Allie; an online search service for abbreviations and long forms in...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Homo sapiens
Description:
HLA DB is a database of disease and haplotype information for the human HLA region. The database con...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Homo sapiens
Description:
Human Variation Database is a collection of data regarding genomic variation. It contains variation ...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Homo sapiens
Description:
The CNV Association database is a portal site for exploring associations between CNVs and disease. C...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Homo sapiens
Description:
The CNV Control database hosts copy number data deposited and collected from published studies. The ...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Homo sapiens
Description:
The SNP Control database is a collection of data from a large number of individuals. The data can be...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Homo sapiens
Description:
KEGG MEDICUS is an integrated database of diseases, drugs and other health-related substances. KEGG ...
Database maintenance site:
Tokyo Institute of Technology
Organism(s) covered:
Homo sapiens | Bacteria
Description:
The Metagenome Database is a database of sequence information from microbial sequencing projects. Th...
Database maintenance site:
Stanford Center for Biomedical Informatics Research
Organism(s) covered:
Bacteria
Description:
MEO is a repository of ontology describing microbial habitats maintained by Tokyo Institute of Techn...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Bacteria | Archaea
Description:
Microbiome Datahub is an international microbiome database focusing on microbiome research. It colle...
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Description:
BioLOD.org is an integrated database of biological open data based on semantic web technology standa...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
Cell lines in RIKEN BioResource Center is a database of resource information maintained by RIKEN BRC...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Mus musculus
Description:
Mouse strain in RIKEN BioResource Center is a database of resource information maintained by RIKEN B...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Description:
Metabolomics.JP is a portal site for metabolomics information maintained by Arita Laboratory, Nation...
Database maintenance site:
Nara Institute of Science and Technology Graduate School of Information Science
Organism(s) covered:
Description:
The Metabolite Activity database collects information on how metabolites affect various organisms. T...
Database maintenance site:
The Noguchi Institute
Organism(s) covered:
Description:
GlycoNAVI is a web site for carbohydrate research. It consist of the 'GlycoNAVI DataBase' for molecu...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
JCGGDB Report is a collection of minireviews about the latest information for passways and the glyco...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
KOmouseDB is a collection of phenotype information of mice which have knockouts in genes relevant fo...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
GDGDB is a database of the disease caused by mutations of glycan-related genes (glycosyltransferases...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
JMSDB is a database of monosaccharide structures. The database contains the formula, name, and sever...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
TuMaRdb is a database of tumor biomarkers: molecular entities and diseases they have been linked to....
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
GlycoPOD is a collection of protocols for performing experiments on glycans. The database contains p...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
PACDB is a curated database of pathogens (e.g. bacteria, fungus, toxin and virus) adhering to carboh...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
This is a database of detailed information about sugar chains, with structure information cross-link...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
This site is a search tool of JCGGDB which is a database of glycan-related data in Japan. It allows ...