Database Record
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PmiRKB: Plant microRNA Knowledge Base
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC01218 | ||||
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| Database nameName of the database | PmiRKB | ||||
| Alternative nameAlternative name of the database | Plant microRNA Knowledge Base | ||||
| URLURL of the database | http://bis.zju.edu.cn/pmirkb | ||||
| Database maintenance siteSite maintaining the database | Zhejiang University | ||||
| Country/RegionCountry or region name where the database maintenance site is located | China | ||||
| Database descriptionDatabase descirption | PmiRKB (Plant microRNA Knowledge Base) is a database collecting information on miRNAs from Arabidopsis thaliana and Oryza sativa.The functional modules that are provided are MiR-Tar, SNPs, Self-reg and Pri-miRNAs. The MiR module contains miRNA sequences and information on pre-miRNA clusters. Target regions of SNPs-from 7 Arabidopsis and of 21 Oryza subspecies-found in miRNAs and pre-miRNAs are provided. Scenes of transcription surrounding the pre-miRNAs are made available with the Pri-miR module, and cleavage signals in target recognition sites of miRNA are revealed by the MiR-Tar module. The Self-reg module makes it possible to infer signals of remnants produced in the process of miRNA-mediated self-regulation and miRNA precursor processing. A keyword search option is provided. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Arabidopsis thaliana (3702), Oryza sativa (4530) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | ― | ||||
| Link(s) to Downloadable dataLinks to downloadable data | ― | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||
| Last update date of this recordLast update date of this English record | 2022-09-21 | ||||
| Record license | Creative Commons CC0 license |