Database Record
Noncoding RNA database
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00598 |
|---|---|
| Database nameName of the database | Noncoding RNA database |
| Alternative nameAlternative name of the database | ― |
| URLURL of the database | http://biobases.ibch.poznan.pl/ncRNA |
| Database maintenance siteSite maintaining the database | Poznan University |
| Country/RegionCountry or region name where the database maintenance site is located | Poland |
| Database descriptionDatabase descirption | This database is a collection of information associated with the sequence and function of non-coding RNA. There are over 30,000 sequences spanning a total of 99 species from Bacteria, Archaea, and Eukaryota. Sequence information is obtained from GenBank, annotations are obtained from FANTOM3 (mouse) and H-invitational Integrated Database (humans), while the genome mapping information uses the UCSC genome browser. The sequences and annotations of small cytoplasmic RNAs from bacteria is obtained from the Rfam database. This database does not include microRNA, snoRNA, and housekeeping RNAs such as rRNA, tRNA, snRNA, and SPR RNA. |
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Bacteria (2), Archaea (2157), Eukaryota (2759) |
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database | ― |
| Language(s)Languages in which the contents of the database are displayed | English |
| Operational statusOperational status for the database | Active |
| Link(s) to Downloadable dataLinks to downloadable data | ― |
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― |
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― |
| Link(s) to "How to use" | ― |
| Contact information of database | ― |
| Link(s) to API / SPARQL endpoint | ― |
| Link to LSDB ArchiveLink to LSDB Archive | ― |
| Link to MEDALS Database listLink to MEDALS Database list | ― |
| Link to TogoTVLink to TogoTV | ― |
| Link to FAIRsharingLink to FAIRsharing | ― |
| Similar databasesDatabases that are similar to this database. | |
| Record maintainerRecord maintainer | Integbio Database Catalog |
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 |
| Last update date of this recordLast update date of this English record | 2013-06-17 |
| Record license | Creative Commons CC0 license |