Database Record
Inactive
TranspoGene: The influence of Transposed Elements (TEs) on the transcriptome of 7 species
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00215 | ||||
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| Database nameName of the database | TranspoGene | ||||
| Alternative nameAlternative name of the database | The influence of Transposed Elements (TEs) on the transcriptome of 7 species | ||||
| URLURL of the database | http://transpogene.tau.ac.il/ | ||||
| Database maintenance siteSite maintaining the database | Tel Aviv University | ||||
| Country/RegionCountry or region name where the database maintenance site is located | Israel | ||||
| Database descriptionDatabase descirption | Transpogene is a database that focusses on how the transcriptome of 7 species are influenced by transposed elements (TEs). It consists of a collection of TEs, which are located in the protein-coding genes of these organisms. The genomes represented are human, mouse, chicken, Zebrafish, fruit fly, nematode and sea squirt, evidently stretching widely across the animal kingdom. Examples of effects these TEs may have on their hosting genes include the creation of new exons, insertion of TEs into introns, exons, and promoters and involvement in the cause and development of diseases. A search option is available where a keyword e.g. the Swissprot entry name or a number of other identifying codes can be entered and various criteria can be selected to narrow down the search results. The Transpogene database is also downloadable in its entirety. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606), Mus musculus (10090), Gallus gallus (9031), Danio rerio (7955), Drosophila melanogaster (7227), Caenorhabditis elegans (6239), Ciona intestinalis (7719) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Inactive | ||||
| Link(s) to Downloadable dataLinks to downloadable data | ― | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||
| Last update date of this recordLast update date of this English record | 2013-06-17 | ||||
| Record license | Creative Commons CC0 license |