Database Record
ChIP-Atlas
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC01558 | ||||
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| Database nameName of the database | ChIP-Atlas | ||||
| Alternative nameAlternative name of the database | ― | ||||
| URLURL of the database | https://chip-atlas.org/ | ||||
| Database maintenance siteSite maintaining the database | Kyushu University Graduate School of Medical Sciences (Link to J-Global), DBCLS (Database Center for Life Science, Research Organization of Information and Systems) (Link to J-Global) | ||||
| Country/RegionCountry or region name where the database maintenance site is located | Japan | ||||
| Database descriptionDatabase descirption | ChIP-Atlas is an integrative database for visualizing and exploiting public ChIP-seq data. This database covers almost all public ChIP-seq data submitted to the SRA (Sequence Read Archives) in NCBI, DDBJ or ENA. ChIP-Atlas is composed of 4 main features; 1) Peak Browser It graphically visualizes protein bindings on given genomic loci with genome browser (IGV). 2) Target genes It predicts target genes bound by given transcription factors. 3) Colocalization It predicts partner proteins colocalizing with given transcription factors. 4) Enrichment Analysis It predicts proteins bound to given genomic loci and genes. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606), Mus musculus (10090), Drosophila melanogaster (7227), Caenorhabditis elegans (6239), Saccharomyces cerevisiae (4932) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Active | ||||
| Link(s) to Downloadable dataLinks to downloadable data | http://chip-atlas.org/peak_browser, http://chip-atlas.org/target_genes, http://chip-atlas.org/colo | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | https://github.com/inutano/chip-atlas/wiki | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | https://dbarchive.biosciencedbc.jp/en/chip-atlas/desc.html | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2016-01-19 | ||||
| Last update date of this recordLast update date of this English record | 2024-05-16 | ||||
| Record license | Creative Commons CC0 license |