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CoP: Co-expressed Biological Processes
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC01074 |
|---|---|
| Database nameName of the database | CoP |
| Alternative nameAlternative name of the database | Co-expressed Biological Processes |
| URLURL of the database | http://webs2.kazusa.or.jp/kagiana/cop/ |
| Database maintenance siteSite maintaining the database | Kazusa DNA Research Institute (Link to J-Global) |
| Country/RegionCountry or region name where the database maintenance site is located | Japan |
| Database descriptionDatabase descirption | CoP is an integrated database consisting of multiple databases with information on co-expressed genes and biological processes in plants based on gene Ontology. The omics data in this database, originate from NCBI, TAIR and GRAMENE databases. For co-expression analyses in this database, the Confeito algorithm is used. The revised version, an upgrade from the CoexProcess database, was released on March 12, 2009. More than ten thousand probes and hundred chips are included and assembled Affymetrix geneChip microarrays include thale cress (Arabidopsis thaliana), soy beans (Glycine max), barley (Hordeum vulgare), rice (Oryza sativa), poplar (Populus trichocarpa), wheat (Triticum aestivum), grapes (Vitis vinifera), and maize (Zea mays), and other microarrays will be added in the future. |
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Arabidopsis thaliana (3702), Oryza sativa (4530), Glycine max (3847), Hordeum vulgare (4513), Populus trichocarpa (3694), Triticum aestivum (4565), Vitis vinifera (29760), Zea mays (4577) |
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database | ― |
| Language(s)Languages in which the contents of the database are displayed | English |
| Operational statusOperational status for the database | ― |
| Link(s) to Downloadable dataLinks to downloadable data | ― |
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― |
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― |
| Link(s) to "How to use" | ― |
| Contact information of database | ― |
| Link(s) to API / SPARQL endpoint | ― |
| Link to LSDB ArchiveLink to LSDB Archive | ― |
| Link to MEDALS Database listLink to MEDALS Database list | http://medals.jp/elist/detail/104.html |
| Link to TogoTVLink to TogoTV | ― |
| Link to FAIRsharingLink to FAIRsharing | ― |
| Similar databasesDatabases that are similar to this database. | |
| Record maintainerRecord maintainer | Integbio Database Catalog |
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 |
| Last update date of this recordLast update date of this English record | 2024-05-15 |
| Record license | Creative Commons CC0 license |