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H-DBAS: Human-transcriptome DataBase for Alternative Splicing

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC00489
Database nameName of the database H-DBAS
Alternative nameAlternative name of the database Human-transcriptome DataBase for Alternative Splicing
URLURL of the database http://www.h-invitational.jp/h-dbas/?lang=en
Database maintenance siteSite maintaining the database AIST (National Institute of Advanced Industrial Science and Technology) (Link to J-Global)
Country/RegionCountry or region name where the database maintenance site is located Japan
Database descriptionDatabase descirption H-DBAS is the Human-transcriptome DataBase for Alternative Splicing, and is based on H-InvDB. Features of H-DBAS include annotated information of genome-wide human AS variants. Representative AS variants (RASVs) were identified from data of 6 model mammals, namely, human, mouse, rat, chimpanzee, macaque and dog, and are provided as full-length cDNA data sets, mRNA data sets and RNA data sets. Equally-spliced variants between these mammals were identified and compared sets are available. Splice sites and motifs that affect SNPs in humans, RASVs that affect protein function in humans and AS junctions tedetced by RNA-Sez tags are provided.
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Homo sapiens (9606), Mus musculus (10090), Rattus norvegicus (10116), Pan troglodytes (9598), Macaca mulatta (9544), Canis lupus familiaris (9615)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:20433709
DOI:-
PubMed ID:19969536
DOI:-
PubMed ID:18838389
DOI:-
PubMed ID:17130147
DOI:-
PubMed ID:16914452
DOI:-
PubMed ID:15103394
DOI:-
Language(s)Languages in which the contents of the database are displayed Japanese, English
Operational statusOperational status for the database Inactive
Link(s) to Downloadable dataLinks to downloadable data http://h-invitational.jp/h-dbas/download.jsp?lang=en
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data ―
Link(s) to Terms of useLinks to terms of use of downloadable data ―
Link(s) to "How to use" ―
Contact information of database ―
Link(s) to API / SPARQL endpoint ―
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list http://medals.jp/elist/detail/7.html
Link to TogoTVLink to TogoTV ―
Link to FAIRsharingLink to FAIRsharing https://fairsharing.org/biodbcore-000241
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer Integbio Database Catalog
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2013-06-17
Last update date of this recordLast update date of this English record 2013-06-17
Record license Creative Commons CC0 license