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Planteome

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC02302
Database nameName of the database Planteome
Alternative nameAlternative name of the database ―
URLURL of the database http://www.planteome.org
Database maintenance siteSite maintaining the database Oregon State University, Bioversity International, New York Botanical Garden, LBNL (Lawrence Berkeley National Laboratory)
Country/RegionCountry or region name where the database maintenance site is located United States
Database descriptionDatabase descirption A resource providing data on bioentities and their associated ontology terms for Plant Biology. The database provides access to ontology-based annotations of genes, phenotypes and germplasms from about 90 plant species. A number of internal and external ontologies are used to annotate the biological data available from this resource.
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Rhodophyta (2763), Phaeophyceae (2870), Chlorophyta (3041), Arabidopsis thaliana (3702), Bryophyta (3208), Cycadophyta (58020), Dicotyledones (71240), Fabaceae (3803), (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=), Gnetophyta (58022), Lycopodiopsida (1521260), Monocotyledons (4447), Oryza (4527), (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=), Polypodiopsida (241806), Solanaceae (4070), Viridiplantae (33090)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:26519402
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PubMed ID:25774204
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PubMed ID:25584184
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PubMed ID:25562316
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PubMed ID:23220694
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PubMed ID:22847540
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PubMed ID:18629207
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PubMed ID:18194960
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PubMed ID:17142475
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PubMed ID:16905665
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PubMed ID:15659431
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PubMed ID:29186578
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Language(s)Languages in which the contents of the database are displayed English
Operational statusOperational status for the database Active
Link(s) to Downloadable dataLinks to downloadable data ―
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data ―
Link(s) to Terms of useLinks to terms of use of downloadable data ―
Link(s) to "How to use" ―
Contact information of database ―
Link(s) to API / SPARQL endpoint ―
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list ―
Link to TogoTVLink to TogoTV ―
Link to FAIRsharingLink to FAIRsharing https://fairsharing.org/10.25504/FAIRsharing.k0kcjw
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer See the corresponding part in the FAIRsharing record
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2019-03-28
Last update date of this recordLast update date of this English record 2020-07-09
Record license Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license