Database Record
Project Tycho: Data for Health
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC02284 | ||||
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| Database nameName of the database | Project Tycho: Data for Health | ||||
| Alternative nameAlternative name of the database | ― | ||||
| URLURL of the database | https://www.tycho.pitt.edu/ | ||||
| Database maintenance siteSite maintaining the database | Project Tycho, University of Pittsburgh, University of Pittsburgh Medical Center, Public Health Dynamics Laboratory, University of Pittsburgh, Department of Epidemiology, University of Pittsburgh | ||||
| Country/RegionCountry or region name where the database maintenance site is located | United States | ||||
| Database descriptionDatabase descirption | In 2013 the the first version of Project Tycho contained weekly case counts for 50 notifiable conditions reported by health agencies in the United States for 50 states and 1284 cities between 1888 and 2014. Over the past four years, over 3700 users have registered to use Project Tycho data for a total of 40 creative works including peer-reviewed research papers, visualizations, online applications, and newspaper articles. Project Tycho 2.0 has expanded its scope to a global level and improved standardization, following FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles where possible. Project Tycho 2.0 includes case counts for 28 additional notifiable conditions for the US and includes data for dengue-related conditions for 99 countries between 1955 and 2010, obtained from the World Health Organization and Ministries of Health. Project Tycho 2.0 datasets are represented in a standard format and include standard SNOMED-CT codes for reported conditions, ISO 3166 codes for countries and first administrative level subdivisions, and NCBI TaxonID numbers for pathogens. Metadata for Project Tycho datasets are available on the website in human-readable format, but also in machine-interpretable DATS and DataCite metadata files. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Babesiidae (32594), Bacillus anthracis (1392), Borrelia (138), Brucella (234), Campylobacter (194), Chalmydia psittaci (83554), Chlamydia (810), Chlamydia trachomatis (813), Clostridium tetani (1513), Coccidioides (5500), Corynebacterium diphtheriae (1717), Cryptosporidium (5806), Dengue virus (12637), Ehrlichia chaffeensis (945), Entamoeba histolytica (5759), Enterobacteriaceae (543), Enterovirus C (138950), Escherichia coli (562), Eschericia coli O157:H7 (83334), Firmicutes (1239), Francisella tularensis (263), Giardia (5740), Haemophilus influenzae (727), Hepatitis C virus (11103), Hepatitis b virus (10407), Homo sapiens (9606), Human hepatitis A virus (208726), Human herpesvirus 3 (10335), Human immunodeficiency virus (12721), Legionella (445), Listeria monocytogenes (1639), Measles virus (11234), Mumps virus (1979165), Mycobacterium leprae (1769), Mycobacterium tuberculosis (1773), Neisseria gonorrhoeae (485), Neisseria meningitidis (487), Neisseria meningitidis serogroup B (491), Plasmodium (418103), Rickettsia rickettsii (783), Rickettsiales (766), Rubella virus (11041), Salmonella (590), Salmonella enterica subsp.enterica serovar Typhi (90370), Shigella (620), Streptococcus pneumoniae (1313), Streptococcus sp. group A (36470), Treponema pallidum (160), Trichinella (6333), Variola virus (10255), Vibrio cholerae (666), West Nile virus (11082), Yellow fever virus (11089), Anaplasma phagocytophilum (948), unidentified influenza virus (11309) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Active | ||||
| Link(s) to Downloadable dataLinks to downloadable data | ― | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | https://fairsharing.org/10.25504/FAIRsharing.jnzrt | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | See the corresponding part in the FAIRsharing record | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2019-03-28 | ||||
| Last update date of this recordLast update date of this English record | 2024-07-28 | ||||
| Record license | Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |