Database Record
Inactive
PTM-Switchboard
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00639 | ||||
|---|---|---|---|---|---|
| Database nameName of the database | PTM-Switchboard | ||||
| Alternative nameAlternative name of the database | ― | ||||
| URLURL of the database | http://cagr.pcbi.upenn.edu/PTMswitchboard | ||||
| Database maintenance siteSite maintaining the database | University of Pennsylvania | ||||
| Country/RegionCountry or region name where the database maintenance site is located | United States | ||||
| Database descriptionDatabase descirption | PTM-Switchboard is a database of known cases of TF-PTMs affecting gene transcriptions. This database contains triplets of genes as a primary data type about the model organism S. cerevisiae (budding yeast). PTM-Switchboard stores triplets of genes as a primary data type such that the ability of one gene (the TF) to regulate a target gene is dependent on a third gene (the modifying enzyme). Currently, this database is populated with experimentally characterized examples of the Modifier-Transcription Factor-gene (MFG) triplets manually curated from the literature. Furthermore, it provides a framework for searching and analyzing the data, and also serve to benchmark computational methods for identifying novel MFG triplets. The entire 'Gold Set' of fully characterized and experimentally validated MFG triplets is available for download in a simple tab-delimited text format. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Saccharomyces cerevisiae (4932) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
|
||||
| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
|
||||
| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
|
||||
| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Inactive | ||||
| Link(s) to Downloadable dataLinks to downloadable data | ― | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
|
||||
| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||
| Last update date of this recordLast update date of this English record | 2017-11-28 | ||||
| Record license | Creative Commons CC0 license |