Database Record
Inactive
TriFLDB: Triticeae Full-Length CDS Database
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC01047 | ||||
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| Database nameName of the database | TriFLDB | ||||
| Alternative nameAlternative name of the database | Triticeae Full-Length CDS Database | ||||
| URLURL of the database | http://trifldb.psc.riken.jp/v3/index.pl | ||||
| Database maintenance siteSite maintaining the database | RIKEN Yokohama Institute (Link to J-Global) | ||||
| Country/RegionCountry or region name where the database maintenance site is located | Japan | ||||
| Database descriptionDatabase descirption | This database offers access to an annotated list of full-length coding DNA sequences of barley and wheat. It contains information on 8530 wheat sequences and 7341 barley sequences. The BarleyDB of Research Institute for Bioresources, Okayama University, contributed 5006 barley full-length cDNA sequences to the collection in this site. 6162 of the wheat examples were recently sequenced in RIKEN and at the Kihara Institute for Biological Research, Yokohama City University. The National Bio Resource Project in Japan supported this project. A search option based on keywords is provided. Additional information on gene function, GO terms, homologous DNA sequences and the related amino acid sequence of each cDNA sequence is given as well as the results of a search for homologous sequences in the genomes rice and sorghum. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Triticum aestivum (4565), Hordeum vulgare (4513), Arabidopsis (3701), Oryza sativa (4530), Sorghum bicolor (4558) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Inactive | ||||
| Link(s) to Downloadable dataLinks to downloadable data | http://trifldb.psc.riken.jp/download.pl | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||
| Last update date of this recordLast update date of this English record | 2015-05-15 | ||||
| Record license | Creative Commons CC0 license |