Database Record
Inactive
ASAP II: the Alternative Splicing Annotation Project II
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC01020 | ||||||||
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| Database nameName of the database | ASAP II | ||||||||
| Alternative nameAlternative name of the database | the Alternative Splicing Annotation Project II | ||||||||
| URLURL of the database | http://fold.doe-mbi.ucla.edu/ASAP2/ | ||||||||
| Database maintenance siteSite maintaining the database | University of California Los Angeles | ||||||||
| Country/RegionCountry or region name where the database maintenance site is located | United States | ||||||||
| Database descriptionDatabase descirption | ASAP II is a database of alternative splicing information coming from genomics and proteomics. It provides precise gene exon-intron structure, alternative splicing, tissue specificity of alternative splice forms, and protein isoform sequences resulting from alternative splicing. As for human, EST libraries are classified and included into tissue and cancer classification, and lists of tissue & cancer (normal) specific alternatively spliced genes are calculated. ASAP II can be easily integrated with pygr (the Python Graph Database Framework for Bioinformatics) and its powerful features such as graph query, multi-genome alignment query and etc. Furthermore, it can help biologists design probe sequences for distinguishing specific mRNA isoforms. This database can be searched by several different criteria such as gene symbol, gene name and ID (Unigene, GenBank etc.). | ||||||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606), Mus musculus (10090), Rattus norvegicus (10116), Xenopus tropicalis (8364), Gallus gallus (9031), Bos taurus (9913), Canis lupus familiaris (9615), Caenorhabditis elegans (6239), Danio rerio (7955), Drosophila melanogaster (7227), Takifugu (31032), Aedes aegypti (7159), Apis mellifera (7460), Anopheles gambiae (7165) | ||||||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||||||
| Operational statusOperational status for the database | Inactive | ||||||||
| Link(s) to Downloadable dataLinks to downloadable data | ― | ||||||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||||||
| Link(s) to "How to use" | ― | ||||||||
| Contact information of database | ― | ||||||||
| Link(s) to API / SPARQL endpoint | ― | ||||||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||||||
| Link to TogoTVLink to TogoTV | ― | ||||||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||||||
| Similar databasesDatabases that are similar to this database. | |||||||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||||||
| Last update date of this recordLast update date of this English record | 2014-04-21 | ||||||||
| Record license | Creative Commons CC0 license |