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REACTOME

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC00185
Database nameName of the database REACTOME
Alternative nameAlternative name of the database ―
URLURL of the database https://reactome.org
Database maintenance siteSite maintaining the database Reactome team
Country/RegionCountry or region name where the database maintenance site is located Global
Database descriptionDatabase descirption REACTOME is a database of human pathways for basic research, genome analysis, pathway modeling, systems biology and education. It contains manually curated and peer-reviewed pathway data which are annotated by expert biologists, in collaboration with Reactome editorial staff and cross-referenced to many bioinformatics databases. This database provides an intuitive website to navigate pathway knowledge and a suite of data analysis tools to support the pathway-based analysis of complex experimental and computational data sets. The curated human pathway data are available to infer orthologous events in 20 non-human species including mouse, rat, chicken, worm, fly, yeast, plant and bacteria. Using species comparison tool, users are able to compare predicted pathways with those of human to find reactions and pathways common to a selected species and human.
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Homo sapiens (9606), Arabidopsis thaliana (3702), Bos taurus (9913), Caenorhabditis elegans (6239), Canis lupus familiaris (9615), Danio rerio (7955), Dictyostelium discoideum (44689), Drosophila melanogaster (7227), Escherichia coli (562), Gallus gallus (9031), Mus musculus (10090), Mycobacterium tuberculosis (1773), Oryza sativa (4530), Plasmodium falciparum (5833), Rattus norvegicus (10116), Saccharomyces cerevisiae (4932), Schizosaccharomyces pombe (4896), Staphylococcus aureus (1280), Sus scrofa (9823), Taeniopygia guttata (59729), Xenopus (Silurana) tropicalis (8364)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:15608231
DOI:-
PubMed ID:29145629
DOI:-
Language(s)Languages in which the contents of the database are displayed English
Operational statusOperational status for the database Active
Link(s) to Downloadable dataLinks to downloadable data https://reactome.org/download-data
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data https://reactome.org/download-data
Link(s) to Terms of useLinks to terms of use of downloadable data https://reactome.org/license
Link(s) to "How to use" ―
Contact information of database ―
Link(s) to API / SPARQL endpoint ―
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list ―
Link to TogoTVLink to TogoTV https://togotv.dbcls.jp/en/result.html?type=lecture&lang=en&page=1&query=REACTOME
Link to FAIRsharingLink to FAIRsharing https://fairsharing.org/biodbcore-000329
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer Integbio Database Catalog
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2013-06-17
Last update date of this recordLast update date of this English record 2022-01-24
Record license Creative Commons CC0 license